miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|31441315|gb|CD510746.1|CD510746 ATCTTAAGAAAACAGTACACGCAGTGTTGATCATTTTCATACAAAATAGGAGGTGGTAGAGATGAGGGAGAGGAGCTTTA
ATCCATTCTGGCCTTCAGGGTACGTGTGGTGATCTTGTCCTTCTCAATGACTTGCACAATGACACCCATGCCTGAAACAG
CATCCCTGTCCACTGCATTCAGCATGGCTTGGGAGATGGTCTCAAACAGGTCCTCTGGTTCCATGTCTGGCTCCCAGAGA
GATTCACACATGCCGTACATCTGCTCTGAGCAAGTGCCGCTCACAACAAAGTCCTCTGTCACCATGGGGCAGCCAATCAG
GTCCAGCGAGCAGATAAATGGCTCAAAGGTCTTGGGGTCCAGCCCAGCGATCACAGGCTCAATGTAGTATGGTCCAAATC
TCCTCTCATACAGCAGGTTGGAGACCATGCTCATGAATGTCTTGGGTTTGATCTGACGCCCCTCCTTCAGCTCATAGAGG
TTCAATCTGAACTTGAGCCTCTGGGAAACTGTCTGTACGTCAGTAGCTAGGCCAGCCAGACCAATGTAGAGTCTGTCTCC
CATGGGAAAGATCTTCTGGAAGTCTGTGGTCACCATCTGAGCCTGTACACCGGATCTTCGATCTGCTGCAATGGCTACAC
ATTGCTTACCCTTCATCGCCATGACGGCACCACCATTATAGGACATAATAGACATTGTGAATACGTTGAGGTATCTTCCT
TAGTCGTGAAATATCTTGTAAATGTTCACTAT




Most similar to sp|O73817|PSB3_ONCMY

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus
           mykiss GN=psmb3 PE=2 SV=1
          Length = 205

 Score =  407 bits (1047), Expect = e-113
 Identities = 203/205 (99%), Positives = 204/205 (99%)
 Frame = -1

Query: 695 MSIMSYNGGAVMAMKGKQCVAIAADRRSGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 516
           MSIMSYNGGAVMAMKGKQCVAIAADRR GVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV
Sbjct: 1   MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60

Query: 515 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 336
           QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF
Sbjct: 61  QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120

Query: 335 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 156
           ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query: 155 SGMGVIVQVIEKDKITTRTLKARMD 81
           SGMGV+VQVIEKDKITTRTLKARMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205